Saturday, February 23, 2013

Classification of All Life


Fred Allebach

CLASSIFICATION   Taxonomy, Phylogeny, Cladistics, Systematics:  Relations and similarities of all life
                                            
terms                                   human                      garlic
Kingdom                            Animalia                   Plantae                 

Phylum (Division)             Chordata                   Angiospermophyta

Subphylum*                     Vertebrata

Class                                Mammalia                  Monocotyledoneae

Order                                Primates                    Liliales

Family                              Hominoidea                Liliaceae

Genus                                Homo                          Alium

Species                             sapiens                      sativum
*intermediate levels can be added w/prefixes sub- and super-

FIVE KINGDOMS model

Monera- bacteria, cyanobacteria (blue-green algae/stromatolites), prokaryotes 
Protista- single celled eukaryotes, individual protozoans and some types of algae
Fungi-      molds, mushrooms
Plantae-   multicellular algae and land plants
Animalia- multicellular animals

Prokaryotes:  mostly small cells, all are microbes, many are strictly anaerobes (which are killed by oxygen) much simpler than....
Eukaryotes:   mostly large cells, some are microbes, most are large organisms, almost all are aerobic

Viruses -  non-cellular molecular parasites, line between organic and inorganic, living/not living, they are not cells, they are particles of genetic material and protein, can invade cells and take over metabolic processes and reproduce, have natural selection just as with "life", can be crystalline and inert, "as crystals they were clearly not living cells but some sort of inert entity." -see "the crystalline entity" on Star Trek: The Next Generation

Human viruses: Measles,  Rubella, Atypical pneumonia, common cold (Coryza viruses, Rhinoviruses) influenza, Hepatitis, Mononucleosis, Poliomyelitis, Mumps, Smallpox, Rabies, Dengue fever, Yellow fever, HIV

Phyla of Kingdom Animalia:  all the major types of animals

Protista, (Protozoa), includes certain plant-like organisms
Porifera: sponges
Placozoa: "scale-ozoa"
Cnidaria: (Coelenterata), hydras, jellyfish, sea anemones, corals, the cnidae or nematocysts are used to ensnare or poison prey                                                                                  
Ctenophora: sea gooseberries or comb jellies, similar to Cnidaria
Platyhelminthes: flat worms
Nemertea: littoral and marine worms, a few terrestrial genera
Rotifera: small, minute animals distinguished by a complex feeding apparatus
Nematomorpha: horse hair worms Order: Gordioidea, appears as long horse hair or violin string up to a meter long, in springs, streams and stagnant water, especially in the mountains (I saw one in Romero Canyon)
Nematoda: eel worms
Mollusca: bivalves, cephalopods, gastropods, brachiopods
Annelida: earth worms, tongue worms, segemented, worm-like animals
Onychophora: some features of annelids and arthropods
Arthropoda: insects, spiders, crustaceans (barnacles)
Echinodermata: spiny skinned: sea urchins, sea stars, sand dollars, sea cucumber, feather star, crinoids/ sea lilies
Chordata

CHORDATA

Superphyla: Craniata (Vertebrata) with cranium, visceral arches, vertebrae and brain,
Phylum: Chordata
Subphylum: Gnathostomata: with jaws and usually paired appendages

Superclass: Pisces: paired fins, gills and skin w/scales
Class:  Placodermi: ancient fishes
           Chondrichthyes: sharks and rays, skeleton cartilage
           Osteichthyes: bony fishes

Superclass: Tetrapoda: paired limbs, lungs, cornified skin and bony skeleton
Class: Amphibia
          Reptilia
          Aves
          Mammalia


Class Amphibia 

Order Salientia          frogs and toads
          Caudata            salamanders
          Meanres            sirens (small front legs no tail)
          Gymnophiona      no limbs, tropics

Class Reptilia

Subclass Anapsida

Order Cotylosauria                 primitive ancestors
Order Testudines                    turtles

Subclass Euryapsida               ancient marine reptiles
Subclass Ichthyopterygia        ancient fish-like reptiles
Subclass Lepidosauria              diapsids

Order Rhynchocephalia              primitive lizard-like
Order Squamata                        advanced lepidosaurians: lizards, snakes, amphisbaenids

Subclass Archosauria                four extinct orders including dinosaurs and pterosaurs

Order Crocodilia                       alligators (el legarto) and crocodiles

Subclass Synapsida

Order Pelycosauria                     early mammal-like reptiles
Order Therapsida                         advanced mammal-like reptiles

Class Mammalia
                               
Order Marsupiala
         Insectivora                     tenrecs, shrews, moles, hedgehog
         Edentata                         sloths, anteaters, armadillos
         Pholidota                         pangolin
         Tubilidentata                  aardvark
         Chiroptera                       bats
         Dermoptera                      flying lemur
         Primates                          monkeys, apes, humans
         Carnivora                          Canids, Mustelids, Ursids, Viverrids, Procyonids,
                                                   Felids, Hyaenids, Phocids, Otarids
         Proboscidea                     elephants
         Sirenia                             manatee, sea cow
         Hyracoidea                        conies
         Perissodactyla                  odd-toes ungulates: tapirs, rhinos, horses
         Artiodactyla                      even-toed ungulates: pigs, camels, deer, sheep,
                                                   goats, giraffes, antelope, cattle
         Cetaceae                            whales
         Rodentia                             rodents, gnawing mammals
         Lagomorpha                         rabbits, hares

Class Aves

Order Struthioniformes                 ostriches
          Rheiformes                          rheas
          Casuariiformes                    cassowaries
          Aepyornithiformes              elephant birds: turkey to ostrich sized flightless
                                                     birds of Africa and Madagascar: EXTINCT historically
          Dinorthiformes                    moas, EXTINCT w/in last 300 years
          Apterygiformes                   kiwis
          Tinamiformes                      tinamous: Mexico to S. America
          Gaviformes                           loons
          Sphenisciformes                   penguins
          Podicipediformes                  grebes
          Procellariiformes                 albatrosses, shearwaters, fulmars, petrels,
                                                        tropic birds
          Pelecaniformes                  pelicans, gannets, cormorants, aningha, frigate bird
          Ciconiiformes                      herons, bitterns, storks, ibises

Subphyla: Agnatha: no true jaws or paired appendages

Class: Ostracodermi: ancient armored fishes
           Cyclostomata: lampreys and hagfish

Superphyla Acrania: no cranium or brain
Phylum Chordata
Subphyla: Hemichordata: notochord short, anterior, nerve tissues in epidermis
Class: Enteropneusta: tongue worms (annelids?)
          Pterobranchia:
          Graptozoa: graptolites: colonial, branched, w/ chitinous covering

Subphyla: Tunicata:
Class: Larvacea: tadpole-like
          Ascidiacea: ascidians, tunic w/ scattered muscles, many gill slits
          Thaliacea: chain tunicates, tunic w/ circular muscle bands
          
Subphyla: Cephalochordata: notochord and nerve chord along entire body
Class: Leptocardii: Lancelets, slender, fish-like, no scales, many gill slits


Division Plantae:  one method

Algae: one celled, colonial or many celled w/ chlorophyl and no true root, stem or leaf
Phaeophyta: brown algae
Chlorophyta: green algae
Rhodophyta: red algae

Land Plants:
Nonvascular Plants:
Bryophyta: bryophytes, moss
Hepatophyta: liverworts
Anthocerophyta: hornworts

Vascular Plants:

Seedless Plants:
Psilophyta: whisk ferns
Pteridophyta/ Filicinophyta: ferns
Sphenophyta: horsetails: Geneus Equisetum
Lycophyta: club moss:

Seed plants:

Gymnosperms:
Cycadophta: cycads :         
Ginkgophyta: Ginkgos :     
Gnetophyta:                                         
Coniferophyta: conifers
Angiosperms:    
Anthophyta:


Kingdom Fungi:


acotyledonous or cryptogamous plant, mushrooms, mold, mildew, rust


LICHEN:  cryptogamous plant w/out stem or leaf consisting of algae and fungi growing in close association


A modified two division scheme of plants and animals with no separate Kingdoms of Protista or Fungi, 1987:

Superkingdom Prokaryota



Kingdom A             Monera
  Division 1               Schizonta              Bacteria
  Division 2               Cyanophyta            Blue-green algae (Cyanobacteria)
  Division 3               Prochlorophyta
 
Superkingdon Eukaryota

  Kingdom A        Phyta (plants)
    Division 1         Chlorophyta                Green algae
    Division 2         Charophyta                 Charophytes
    Division 3         Euglenophyta              Euglenids
    Division 4         Chrysophyta               Golden algae
    Division 5         Phaophyta                  Brown algae
    Division 6         Pyrrhophyta               Dinoflagellates
    Division 7         Rhodophyta                Red algae
    Division 8         Hepatophyta               Liverworts
    Division 9         Anthceratophyta        Hornworts
    Division 10       Bryophyta                   Mosses
    Division 11       Psilotophyta               Psilophytes
    Division 12       Microphyllophyta        Club and spike mosses
    Division 13       Arthrophyta                Horsetails and sphenopsids
    Division 14       Pteridophyta               Ferns
    Division 15       Cycadophyta                Cycads
    Division 16       Ginkgophyta                 Ginkgo
    Division 17       Coniferophyta              Conifers
    Division 18       Gnetophyta                   none
    Division 19        Anthophyta                 Flowering plants

Kingdom B          Mycetae (Fungi)
    Division 1          Myxomycota                Slime molds
    Division 2          Acrasiomycota            Cellular slime molds
    Division 3          Chytridiomycota
    Division 4          Oomycota                     Posteriorly uniflagellate fungi
    Division 5          Zygomycota                  Bread molds and others
    Division 6          Ascomycota                 Sac fungi
    Division 7          Basidiomycota             Club fungi
    Division 8          Deuteromycota             Imperfect fungi  

Superkingdom Animalia
It has become clear that there is no agreement on how to exactly break down the relations between all life. That we are all related is of no question. The lumpers group and the splitters divide.6

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